Researchers combine pMINFLUX, graphene energy transfer and DNA-PAINT for a super-resolution microscopy method for rapid differentiation of molecular structures in 3D

A team of researchers, led by Ludwig-Maximilians-University (LMU) chemist Prof. Philip Tinnefeld, has combined 2D MINFLUX microscopy with a new method for axial resolution. This combination, which exploits the special properties of graphene, enables an axial precision of less than 3 angstroms.

It was only a few years ago that a resolution limit in optical microscopy which seemed fundamental was broken, when researchers overcame the resolution limit of around 250 nanometers (winning the 2014 Nobel Prize in Chemistry for their efforts). Since then, the methods of microscopy have progressed rapidly.


The researchers combined the pMINFLUX method developed by Tinnefeld's team with an approach that utilizes special properties of graphene as an energy acceptor. pMINFLUX is based on the measurement of the fluorescence intensity of molecules excited by laser pulses. The method makes it possible to distinguish their lateral distances with a resolution of just 1 nanometer.

Graphene absorbs the energy of a fluorescent molecule that is no more than 40 nanometers distant from its surface. The fluorescence intensity of the molecule therefore depends on its distance from graphene and can be used for axial distance measurement.

Consequently, the combination of pMINFLUX with this so-called graphene energy transfer (GET) provides information about molecular distances in all three dimensions—and does this in the highest resolution achievable to date of under 0.3 nanometers. "The high precision of GET-pMINFLUX opens the door to new approaches for improving super-resolution microscopy," says Jonas Zähringer, lead author of the paper.

The researchers also used this to further increase the speed of super-resolution microscopy. To this end, they drew on DNA nanotechnology to develop the so-called L-PAINT approach. In contrast to DNA-PAINT, a technique that enables super-resolution through the binding and unbinding of a DNA strand labeled with a fluorescent dye, the DNA strand in L-PAINT has two binding sequences.

In addition, the researchers designed a binding hierarchy, such that the L-PAINT DNA strand binds longer on one side. This allows the other end of the strand to locally scan the molecule positions at a rapid rate.

"As well as increasing the speed, this permits the scanning of dense clusters faster than the distortions arising from thermal drift," says Tinnefeld. "Our combination of GET-pMINFLUX and L-PAINT enables us to investigate structures and dynamics at the molecular level that are fundamental to our understanding of biomolecular reactions in cells."

Posted: Mar 12,2023 by Roni Peleg